Active Directory Certificate Import Successful, but LDAP Authentication Still Fails
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ANSWER:
Wow, figured it out already. Apparently, the JDK installer deployed an additional JRE install to C:Program FilesJavajre6 which includes the latest jre release. This directory was being used despite what JAVA_HOME and PATH are being set too. I had to import my cert to C:Program FilesJavajre6libsecuritycacerts and everything started working again.
by Jason Huntley from http://serverfault.com/questions/383157

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